Role of the Pst System in Plaque Formation by the Intracellular Pathogen Shigella flexneri
http://www.100md.com
感染与免疫杂志 2005年第3期
Department of Biology, University of Richmond, Richmond, Virginia
Section for Molecular Genetics and Microbiology and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas
ABSTRACT
In response to the host cell environment, the intracellular pathogen Shigella flexneri induces the expression of numerous genes, including those in the pst operon which is predicted to encode a high-affinity phosphate acquisition system that is expressed under reduced phosphate conditions. An S. flexneri pst mutant forms smaller plaques in Henle cell monolayers than does the parental strain. This mutant exhibited normal production and localization of the S. flexneri IcsA protein. The pst mutant had the same growth rate as the parental strain in both phosphate-reduced and phosphate-replete media in vitro and during the first 3 h of growth in Henle cells in vivo. During growth in phosphate-replete media, the PhoB regulon was constitutively expressed in the pst mutant but not the parental strain. This suggested that the inability of the S. flexneri pst mutant to form wild-type plaques in Henle cell monolayers may be due to aberrant expression of the PhoB regulon. A mutation in phoB was constructed in the S. flexneri pst mutant, and the phoB mutation suppressed the small plaque phenotype of the pst mutant. Additionally, a specific mutation (R220Q) was constructed in the pstA gene of the pst operon that was predicted to eliminate Pst-mediated phosphate transport but allow normal PhoB-regulated gene expression, based on the phenotype of an Escherichia coli strain harboring the same mutation. Addition of this pstAR220Q mutation to a S. flexneri pst mutant, as part of the pst operon, restored normal plaque formation and regulation of phoA expression.
INTRODUCTION
Shigella flexneri is a facultative intracellular bacterium that causes bacterial dysentery in humans. While in the host, Shigella can invade colonic epithelial cells and survive and multiply within the eukaryotic cytosol (24). This environment is a unique niche for Shigella, consisting of a particular set of nutrients and ions, distinct from the extracellular and external environments. Specific S. flexneri genes are induced in response to exposure to the eukaryotic cytosol and encode, among other things, proteins involved in metabolism and nutrient uptake (22). Two of these intracellular induced S. flexneri genes are the phoA and pstS genes, which encode proteins that mediate inorganic phosphate acquisition. phoA encodes an alkaline phosphatase that cleaves phosphate from organophosphates in the periplasm (7), and pstS encodes a periplasmic phosphate binding protein (29). This suggested that genes that mediate inorganic phosphate acquisition might be important for Shigella to survive in the intracellular environment and that phosphate levels may be a signal for intracellular induction of Shigella genes.
In Escherichia coli, which is very closely related to S. flexneri phylogenetically (20), the Pst high-affinity inorganic phosphate uptake system has been well characterized. The Pst system is a member of the periplasmic binding protein-dependent ABC transporter family, which transports molecules from the periplasm to the cytoplasm. The proteins in the Pst system are encoded within the five-gene pst operon. The system is composed of the periplasmic phosphate binding protein PstS; the two transmembrane proteins PstA and PstC, which transport the phosphate through the inner membrane; the ATP binding protein PstB, which supplies the energy for transport via ATP hydrolysis; and a protein (PhoU) whose role in phosphate transport is not clear (29).
In addition to mediating high-affinity phosphate uptake, the Pst system also influences phosphate-mediated gene regulation. Inorganic phosphate regulation of gene expression in E. coli and S. flexneri is mediated by the two-component regulatory system PhoR/PhoB (25, 33). This regulatory system consists of the phosphate sensor PhoR and the transcriptional activator PhoB, which binds to PhoB boxes in the promoters of genes that it regulates. PhoR, whose amino terminus is associated with the bacterial membrane, senses phosphate levels outside the cell (10). Under reduced phosphate conditions, PhoR phosphorylates the transcriptional activator PhoB, which enhances the DNA binding activity of this protein (10). Active PhoB directly binds the promoter region of PhoB-regulated genes to activate gene expression in most cases (11). Among the 31 PhoB-regulated genes is the gene encoding alkaline phosphate (phoA). When phosphate levels are high outside the cell, the Pst complex maintains PhoR in a conformation that dephosphorylates (and therefore inactivates) PhoB. In E. coli, mutations that disrupt the Pst system generally result in constitutive expression of the PhoB regulon (33).
In S. flexneri, a polar mutation in the pstS gene eliminates expression of the entire pst operon and thus of the Pst system, and an S. flexneri strain carrying this pst mutation forms smaller plaques on Henle cells than those formed by wild-type S. flexneri (22). The underlying reason for the small plaque phenotype of the S. flexneri pst mutant is currently unknown; however, since other phosphate transport systems may compensate for lack of Pst-mediated phosphate transport, the defect in the pst mutant could be due to constitutive expression of the PhoB regulon. The aim of this study was to elucidate the molecular basis of the plaque formation defect of an S. flexneri pst mutant strain.
MATERIALS AND METHODS
Bacterial strains and plasmids. The bacterial strains and plasmids used in this study are listed in Table 1. E. coli strains were routinely grown in Luria-Bertani (LB) broth or on LB agar. S. flexneri strains were typically grown in LB broth at 30°C or at 37°C when expression of invasion proteins was required. For growth on solid media, S. flexneri strains were grown on tryptic soy broth agar plus 0.01% Congo red dye at 37°C. Antibiotics, when required, were generally used at the following concentrations (per milliliter): 12.5 μg of tetracycline, 15 μg of chloramphenicol, 200 μg of streptomycin, and 125 μg of carbenicillin. X-gal was added at 40 μg/ml for blue-white selection in cloning.
To grow strains in various concentrations of phosphate, T medium (26) containing 0.4% glucose, 2 μg of nicotinic acid/ml, and 40 μM ferrous sulfate was made without phosphate, and various amounts of potassium phosphate (pH 7.0) were then added to the media. Complete T media containing 2 or 0.01 mM phosphate was designated high-phosphate media (HPM) and low-phosphate media (LPM), respectively.
Standard recombinant DNA procedures. Small plasmids were routinely isolated using a QIAprep Spin Miniprep kit (QIAGEN, Santa Clarita, Calif.). Chromosomal DNA was isolated using a DNeasy tissue kit (QIAGEN). DNA was extracted from agarose gels and/or purified using either a QIAquick gel extraction kit or a QIAGEN QuiaxII bead kit (QIAGEN). Chromosomal DNA was extracted using a QIAGEN DNeasy tissue kit. All procedures were performed according to the manufacturer's instructions. Restriction enzyme digests were performed using buffers and enzymes from Promega Corp. (Madison, Wis.). Ligations were performed using T4 DNA ligase (Promega) and the buffer supplied by the manufacturer and were incubated at either 16°C for 4 h to overnight for sticky-end ligations or at room temperature (25°C) overnight for blunt-end ligations.
All PCRs were carried out using either Taq (Promega) or Pfu Turbo polymerase (Stratagene Cloning Systems, La Jolla, Calif.) by using the buffers and instructions supplied by the manufacturer. Taq was used for all PCRs unless the fragments were to be cloned or sequenced, in which case Pfu Turbo was used. Primers for individual PCRs are listed in the appropriate sections below. The reactions conditions were as follows: (i) 5 min at 95°C; (ii) 30 s at 95°C; (iii) 30 s at 55°C; (iv) 2 min/kb of desired product at 72°; (v) repeat steps two to four 29 times; (vi) 10 min at 72°C; (vii) 4°C.
IcsA localization. Rabbit polyclonal antibody against IcsA (Rabbit 35) was obtained from Edwin Oaks (Walter Reed Army Institute of Research). Bacterial strains were grown to late logarithmic phase, centrifuged, washed two times with Dulbecco’s phosphate-buffered saline (PBS-D), and fixed in PBS-D containing 4% paraformaldehyde for 15 min. Then, the bacteria were washed twice with PBS-D, resuspended in 100 μl of IcsA antiserum diluted 1:100 in PBS-D, and incubated for 1 h. After three washes in PBS-D, the bacteria were resuspended in 100 μl of fluorescein isothiocyanate-conjugated goat anti-rabbit secondary antibody (ICN Biomedicals) diluted 1:100 in PBS-D and incubated for 1 h shielded from light. The bacteria were washed twice with PBS and resuspended in a final volume of 100 μl of PBS. One to 10 microliters of the samples was air dried on a slide. Coverslips were mounted on the slide in mounting media containing PBS-D, pH 8, 0.1% phenylenediamine, and 90% glycerol and visualized by fluorescent microscopy.
phoA expression. phoA expression was measured using the plasmid-borne phoA-gfp fusion pLR83 (22) or by reverse transcription (RT)-PCR. For phoA-gfp expression studies, Shigella strains containing pLR83 were subcultured 1:100 into HPM or LPM and grown for 5 to 6 h at 37°C. One milliliter of each culture was centrifuged and the pellet was resuspended in 4% paraformaldehyde for 10 min. The samples were then washed twice by centrifugation followed by resuspension of the cell pellet in low-salt PBS. Green fluorescent protein (GFP) levels were quantified using a FACSCaliber (Becton Dickinson, Franklin Lakes, N.J.) fluorescence-activated cell sorter with an excitation at 488 nm. FACSCaliber settings were as follows: forward scatter, E01; side scatter, 505; and relative fluorescence between 515 and 545 nm, 798.
For phoA expression studies using RT-PCR, overnight LB cultures were pelleted and concentrated 10-fold in LPM media. The resuspended cells were inoculated 1:100 into either LPM or HPM and incubated at 37°C for 5 h. Total RNA was isolated from the cultures by using a RNeasy Mini kit (QIAGEN) and quantitated by measuring the absorbance at 260 nm. To amplify and quantitate the amount of phoA mRNA in each sample, RT-PCR was carried out using a One-Step RT-PCR kit (QIAGEN) according to the manufacturer's instructions. Aliquots of the reactions were removed at cycles 21, 24, 27, and 30 to verify linearity. RT-PCR was performed with 10 ng of total RNA by using the phoA primers UR033 (5' TATTGCACTGGCACTCTTACC 3') and UR037 (5' AGCGCATAGTGAGTGTATTGC 3'). The RT-PCR products were run on a 1.5% agarose gel, and the amount of DNA in each 0.3-kb phoA band was quantified using densitometry analysis.
Construction of UR005 (S. flexneri pstS phoB double mutant) by allelic exchange. The phoBR genes from strain SM100 were amplified by using PCR with primers phoBR1 (5 'CGGGATCCAAACTCAGTGGAATGGG 3') and phoBR2 (5' CGGAATTCGCATCGGCTGGCTTATGG 3'). The phoBR fragment was digested with EcoRI and BamHI and ligated with pWKS30 digested with EcoRI and BamHI to generate pLL1. A 1.5-kb fragment containing a tetracycline resistance gene (tet) was isolated from pMTLtet by digestion with PstI and mung bean nuclease and was inserted into the SmaI site in phoB on pLL1. phoBR with the tet resistance cassette in phoB was excised as a XhoI/XbaI fragment and ligated into pHM5 digested with SalI/XbaI to generate pLL2.
pLL2 containing the phoB::tet gene was mated from E. coli SM10pir to S. flexneri SM169, and cells were plated on tryptic soy broth agar containing tetracycline and chloramphenicol. Isolated colonies were then streaked on LB agar plates containing 5% sucrose, tetracycline, and chloramphenicol to select for double-crossover recombinant colonies. Putative mutants were screened for carbenicillin sensitivity on LB agar. Disruption of the chromosomal phoB gene was confirmed by PCR analysis.
Generation of the pstA point mutation pstAR220Q by overlap extension. To generate the mutation in S. flexneri pstA which changes arginine 220 to glutamine (pstAR220Q), PCR overlap extension (5) was employed using the overlapping primers UR015 (5' GCGATTGCCCAAATTGCC 3') and UR016 (5' GGCAATTTGGGCAATCGC 3') containing the underlined mutations. The two overlapping fragments were generated separately using PCR with the primer pairs UR016-UR013 (5' GTATCGTTCTTCCGTTCACCA 3') and UR015-UR014 (5' ATACGTACCGCTTCGTCAATG 3'). The PCR products were gel purified, and these fragments were used as the template DNA in a second PCR with primers UR013 and UR014 to generate a full-length DNA fragment containing the pstAR220Q mutation.
To replace wild-type pstA in pPst1 with the mutated pstAR220Q, the 2.1-kb StyI fragment from the pstAR220Q PCR fragment was used to replace the corresponding StyI fragment in pPst1. Sequence analysis at the Nucleic Acid Research Facility at Virginia Commonwealth University confirmed that the pstAR220Q point mutation was the only mutation present on the resulting plasmid pAB1.
Henle cell assays. Monolayers of Henle cells (intestinal 407 cells; American Type Culture Collection, Manassas, Va.) were used in all experiments and were maintained at 37°C in a 5% CO2 atmosphere in Henle medium, which consists of minimum essential medium (Invitrogen Corp., Carlsbad, Calif.), 2 mM glutamine, nonessential amino acids, and 10% fetal bovine serum (Invitrogen). The intracellular multiplication assay was performed as described previously (6). Briefly, to infect the Henle cells with Shigella, subconfluent monolayers were infected with Shigella at a multiplicity of infection of 100 and incubated for 45 min. The infected monolayers were washed and incubated in Henle medium containing gentamicin (20 μg/ml). At the indicated time points, bacteria were recovered from one set of infected Henle cells by lysis of the Henle cells with 1 to 5% deoxycholate and plated on Congo red agar. A second set of infected monolayers was stained with Wright-Giemsa stain to quantitate percent invasion (percentage of Henle cells containing three or more intracellular bacteria). The average number of intracellular bacteria per infected Henle cell was calculated as CFU from the Congo red agar divided by the number of infected Henle cells.
Plaque assays were performed as described by Oaks et al. (16) with the modifications described in Hong et al. (6), and plaques were scored after 2 to 4 days.
RESULTS
Virulence-associated phenotypes of the S. flexneri pst mutant SM169. We previously constructed an insertion mutation in the S. flexneri pstS gene that was polar on all of the downstream genes in the pst operon. This pst mutant, SM169, forms smaller plaques in eukaryotic cell (Henle) monolayers than does the parental strain (22). Since wild-type plaque formation requires polar localization of the Shigella protein IcsA (13), the small plaque defect in SM169 may be due to aberrant IcsA localization. Thus, we examined IcsA localization in SM169 by indirect immunofluorescence. The pst mutant SM169 exhibited production and localization of the S. flexneri IcsA protein that was similar to that of the wild-type strain SM100 (Fig. 1). This suggested that the small plaque formation is due to an underlying defect other than improper IcsA localization.
Growth of the S. flexneri pst mutant SM169 in vitro and in vivo. Wild-type plaque formation also requires normal growth of Shigella within the Henle cell cytosol (16). To determine whether the pst mutation affected the growth rate of Shigella, we compared the growth of the pst mutant SM169 to the growth of the wild-type strain SM100 in vitro and inside Henle cells. In T medium containing various concentrations of phosphate (ranging from 2 to 0.001 mM), there was no difference between the optical density of SM100 and that of SM169 at each phosphate concentration (Fig. 2). This suggests that the pst mutation does not significantly affect the growth of Shigella in vitro.
The intracellular multiplication assay was used to measure growth of Shigella in Henle cells. Bacteria were recovered from infected Henle cell monolayers at various time intervals postinvasion, and the number of bacteria per infected Henle cell was determined (Fig. 3). The number of SM169 bacteria recovered at each time point was similar to the number of SM100 that were recovered at the same time, suggesting that the underlying cause of the small plaque phenotype in the pst mutant is not a reduced growth rate during the first 3 h of Henle cell infection. Intracellular growth of the strains at later time points could not be easily measured using the intracellular multiplication assay because the Henle cells lyse approximately 4 h postinvasion (data not shown). The size of the plaques that Shigella forms 2 to 3 days postinfection on Henle cell monolayers is proportional to the intracellular growth rate (6). Extra phosphate (7 mM) was added to the plaque assays in an attempt to suppress the small plaque defect of SM169. However, cells supplemented with additional phosphate had the same size plaques as those that were not supplemented (data not shown).
Expression of the PhoB regulon in the S. flexneri pst mutant SM169. In E. coli, the Pst system interacts with the PhoBR regulatory system to control phosphate-mediated gene regulation (33). E. coli pst mutants constitutively express genes in the PhoB regulon, which are normally repressed in phosphate-replete media. To determine whether this is the case in S. flexneri, we used a plasmid-borne fusion of the PhoB-regulated gene phoA to the promoterless gfp gene (pLR83) to assess expression of the PhoB regulon. Wild-type S. flexneri SM100 and the pst mutant SM169 carrying pLR83 were grown in HPM or LPM, and GFP reporter activity was measured. In SM100/pLR83, GFP expression driven by the phoA promoter was 22-fold lower after growth in HPM, relative to GFP expression after growth in LPM (Fig. 4). In contrast, GFP expression driven by the phoA promoter in SM169/pLR83 was aberrantly high when the strain was grown in HPM; specifically, GFP expression was only twofold lower after growth in HPM, relative to GFP expression after growth in LPM, and there was 23-fold more phoA promoter activity in SM169, relative to SM100, in HPM (Fig. 4). Thus, the pst mutation resulted in increased, and essentially constitutive, expression of phoA (Fig. 4) and other genes in the PhoB regulon (data not shown). This suggests that, as in E. coli, when phosphate levels are high outside the cell, the Shigella Pst complex maintains PhoR in a conformation that dephosphorylates (and therefore inactivates) PhoB.
Suppression of the plaque defect in SM169 by a phoB mutation. PhoB mediates induction of phoA and other genes in the PhoB regulon under low phosphate conditions (10-12). If constitutive expression of the PhoB regulon in the pst mutant SM169 is responsible for the small plaque phenotype, then elimination of PhoB in this strain would be expected to restore normal plaque formation ability to SM169. A phoB mutation was generated by allelic exchange in the S. flexneri pst mutant strain to test this hypothesis. The resulting pst phoB mutant (UR005) formed plaques on Henle cells monolayers that were similar in size to those formed by wild-type SM100, and two times larger in area than the plaques formed by SM169, indicating that eliminating normal PhoB restored the normal plaque formation capability to the pst mutant (Fig. 5A to C). This suggests that constitutive expression of a gene (or genes) in the PhoB regulon was responsible for the small plaque phenotype in SM169.
Plaque-forming ability of a pstA mutant with uncoupled Pst-mediated phosphate transport and regulation. To provide further evidence that the small plaque defect in the pst mutant results from constitutive expression of the PhoB regulon, we introduced a defined mutation (pstAR220Q) into the S. flexneri pstA gene. PstAR220Q had been shown previously to allow wild-type expression of genes in the PhoB regulon but prevent Pst-mediated phosphate transport in E. coli (2). A DNA fragment containing this mutation was used to replace the corresponding wild-type pstA sequence on pPst1, which carries the entire S. flexneri pst operon.
We confirmed that pstAR220Q conferred wild-type expression of the PhoB regulon in the S. flexneri pst mutant by examining expression of the PhoB-regulated gene phoA by RT-PCR. phoA DNA was amplified by RT-PCR on RNA isolated from various S. flexneri strains grown in LPM or HPM. The pst mutant strain containing only the vector (SM169/pWKS30) showed consistently high expression of phoA regardless of the phosphate levels. The pst operon containing the pstAR220Q mutation on pAB1 complemented the constitutive PhoB regulon defect in the pst mutant SM169 just as effectively as the wild-type pst operon on pPst1: SM169 carrying either pAB1 or pPst1 had a wild-type pattern of phoA expression (i.e., low levels of phoA expression in HPM and high levels of phoA expression in LPM) (Fig. 6).
The ability of pAB1 to restore normal plaque formation to SM169 was also assessed. SM169 and SM169/pWKS30 formed plaques that were two times smaller in area than the wild-type plaques, while the pstAR220Q mutant (SM169/pAB1) formed plaques similar in size to those formed by SM100 and SM169/pPst1 (Fig. 5). Since the pstAR220Q mutation confers wild-type expression of genes in the PhoB regulon (Fig. 6) and normal plaque formation (Fig. 5), but defective Pst-mediated phosphate transport (2), this suggests that constitutive expression of a gene or genes in the PhoB regulon was responsible for the small plaque phenotype in SM169.
DISCUSSION
The ability of Shigella to cause disease is frequently correlated with the ability to form plaques on eukaryotic cell monolayers. Plaque formation is a complex phenotype that is the result of a sequence of events including invasion and entry into the cytoplasm of eukaryotic cells, multiplication within the host cells, polar localization of the bacterial protein IcsA and subsequent polymerization of host cell actin, and lysis of the vacuoles that surround the double membrane after intercellular spread. Many Shigella mutants have been isolated that form small plaques and the underlying defect can be in one or more of the above processes. The S. flexneri pst mutant SM169 forms smaller plaques relative to the parental strain SM100 (22). SM169 invades at the same frequency and localizes IcsA in a similar fashion as SM100, suggesting that the small plaque phenotype is not due to defects in these processes. During the first 3 h after infection of Henle cells, SM169 and SM100 multiply at the same rate within the eukaryotic cytosol; however, we cannot eliminate the possibility that growth of the pst mutant SM169 slows down at a later time, relative to SM100, possibly due to nonoptimal expression of the PhoB regulon (see below).
E. coli pst mutants are defective in both high-affinity phosphate transport and in phosphate-dependent regulation of the PhoB regulon (29, 33). It was not apparent which of these Pst-mediated functions was required for normal plaque formation in Shigella since defects in either or both of these tasks could contribute to the small plaque phenotype. Because other phosphate transport systems such as the PitA and PitB systems exist in S. flexneri (35), it was possible that these systems compensate for loss of Pst-mediated phosphate transport in S. flexneri pst mutants but not necessarily for aberrant regulation of the PhoB regulon. Thus, the failure to form wild-type plaques was hypothesized to be the result of aberrant PhoB-mediated regulation. Two lines of evidence from this study support this model. First, the small plaque defect in the pstS mutant was suppressed by mutating the gene encoding the activator of the PhoB regulon (phoB) to eliminate PhoB regulon overexpression in the pst mutant. This data also suggests that PhoB may not be required for virulence, which is consistent with the observation that some Shigella dysenteriae strains have mutations in phoB (9). Second, a Pst system with PstAR220Q, which confers normal expression of the PhoB regulon but defective Pst-mediated phosphate transport, restored the ability of the Shigella pst mutant to form wild-type plaques on Henle cell monolayers. Taken together, these results indicate that the regulatory function of Pst is more important than it's phosphate transport function for S. flexneri's growth and intercellular spread in Henle cells, and the results are consistent with the model of aberrant PhoB regulon expression being responsible for SM169's plaque formation defect.
Optimal growth of a bacterium in its niche requires finely tuned gene expression. Shigella has numerous genes that are predicted to be regulators of gene expression (35). If the Shigella pst mutant expresses any of the 31 PhoB-regulated genes (33) at aberrantly high levels (due to the defective Pst system) while in the eukaryotic cell, this uncontrolled expression may be detrimental. Two PhoB regulon genes encode known or predicted periplasmic proteins: PsiF and PhoA, a nonspecific alkaline phosphatase (7, 15). Two genes in the PhoB regulon, psiE and phoE, encode an inner membrane protein and an outer membrane porin, respectively (1, 15, 18). Uncontrolled expression of either of these membrane proteins may disrupt the bacterial membrane or allow too much of a transported ligand to enter Shigella. Two PhoB-regulated operons are involved in phosphonate uptake and degradation (33). Phosphonates are a class of organophosphorus compounds that have carbon-phosphorous bonds. The enzymes encoded by these systems may be harmful to intracellular Shigella if expressed at abnormally high levels. Further, overexpression of the membrane components of the ABC transporter systems, which transport the substrates for these systems into the bacterial cell, may be toxic to the cell or slow down the growth rate when Shigella is intracellular. Finally, the PhoB-regulated protein PhoH contains two motifs that resemble a nucleotide binding pocket and, not surprisingly, PhoH binds ATP (8). PhoH may hydrolyze ATP, since this is a common feature of many ATP binding proteins. Excessive ATP hydrolysis when Shigella is intracellular may be detrimental. Interestingly, the genome sequence of S. flexneri strain 2457 has two frameshifts in the phoH gene, but the phoH sequence in S. flexneri strain 301 does not have these frameshifts. It is not known whether PhoH is expressed in SM100, the strain used in this study.
Recent studies suggest that the Pst system may modulate the virulence of several other pathogens. Mutations in pst cause reduced virulence in the fish pathogen Edwardsiella tarda (14, 28) and eliminate virulence in an E. coli strain pathogenic to pigs (3). In an enteroinvasive E. coli strain, an insertion mutation in the pst operon resulted in a hyperinvasive phenotype; however, this is not the case for S. flexneri (27). In enteroinvasive E. coli, overexpression of the Pst operon may induce an unknown invasion pathway. Expression of the Streptococcus pneumoniae pstS gene increases during growth in the murine peritoneal cavity, but it is not known whether the encoded protein contributes to virulence (17). Valdivia and Falkow (31) showed that the pstS gene was induced when Salmonella enterica serovar Typhimurium was intracellular; however, the pstS mutant was not attenuated in virulence. This may reflect a difference in the intracellular location of Salmonella compared to Shigella. Salmonella resides in an altered macrophage vacuole, while Shigella is found in the cytosol of colonic epithelial cells.
Although the S. flexneri pstS and phoA genes are induced in the eukaryotic cytosol, which suggested that the bacteria may be sensing reduced levels of available phosphate (22), the underlying reason for the small plaque phenotype in the pst mutant appears to be aberrant overexpression of the PhoB operon, not phosphate limitation. Previously observed induction of genes in the PhoB regulon when Shigella was intracellular was complicated, as only part of the bacterial population that was grown in Henle cells induced the pstS and phoA genes during the initial stages of infection. This suggested that either individual Henle cells may have different phosphate levels or different parts of the Henle cell may have different phosphate levels (22). In light of our new data that supports aberrant overexpression of the PhoB regulon, not phosphate limitation, as the underlying reason for the small plaques in the pst mutant, it is possible that the bacteria are not severely starved for phosphate in the eukaryotic cytosol. Instead, the intracellular bacteria may be experiencing moderate phosphate limitation which would cause the intermediate induction of the PhoB regulon that appears to be optimal for Shigella in the Henle cell cytosol but would not cause complete induction (as in the pst mutant) of the PhoB regulon that appears to be detrimental to plaque formation when Shigella is intracellular. Finally, intracellular induction of the PhoB regulon may be due not to phosphate limitation but to cross talk with the CreBC two-component regulatory system. In E. coli there is a phosphate-independent induction of the PhoB regulon that requires the sensor protein CreC, which may be detecting a central metabolism intermediate, and glucose, acetate, or pyruvate C (34). A similar system may exist in Shigella.
ACKNOWLEDGMENTS
We gratefully thank the following individuals for their generous help: Haig Eskandarian for critical reading of the manuscript, Georgiana Purdy for help with IcsA localization assays, Edwin Oaks for anti-IcsA antisera, Stefan Seliger for strain SM100, and Stephanie Reeves for pMTLtet.
This work was supported by Public Health Service Grants AI09918 awarded to L. J. Runyen-Janecky and AI16935 awarded to S. M. Payne and by funding from the University of Richmond School of Arts and Sciences. A. M. Boyle was supported by the Robert F. Smart Award in Biology at the University of Richmond.
REFERENCES
1. Benz, R., R. P. Darveau, and R. E. Hancock. 1984. Outer-membrane protein PhoE from Escherichia coli forms anion-selective pores in lipid-bilayer membranes. Eur. J. Biochem. 140:319-324.
2. Cox, G. B., D. Webb, J. Godovac-Zimmermann, and H. Rosenberg. 1987. Arg-220 of the PstA protein is required for phosphate transport through the phosphate-specific transport system in Escherichia coli but not for alkaline phosphatase repression. J. Bacteriol. 170:2283-2286.
3. Daigle, F., J. Fairbrother, and J. Harel. 1995. Identification of a mutation in the pst-phoU operon that reduces pathogenicity of an Escherichia coli strain causing septicemia in pigs. Infect. Immun. 63:4924-4927.
4. Ditta, G., S. Stanfield, D. Corbin, and D. R. Helinski. 1980. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc. Natl. Acad. Sci. USA 77:7347-7351.
5. Ho, S. N., H. D. Hunt, R. M. Horton, J. K. Pullen, and L. R. Pease. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
6. Hong, M., Y. Gleason, E. E. Wyckoff, and S. M. Payne. 1998. Identification of two Shigella flexneri chromosomal loci involved in intercellular spreading. Infect. Immun. 66:4700-4710.
7. Inouye, H., S. Michaelis, A. Wright, and J. Beckwith. 1981. Cloning and restriction mapping of the alkaline phosphatase structural gene (phoA) of Escherichia coli and generation of deletion mutants in vitro. J. Bacteriol. 146:668-675.
8. Kim, S. K., K. Makino, M. Amemura, H. Shinagawa, and A. Nakata. 1993. Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J. Bacteriol. 175:1316-1324.
9. Lee, T., K. Makino, H. Shinagawa, M. Amemura, and A. Nakata. 1989. Phosphate regulon in members of the family Enterobacteriaceae: comparison of the phoB-phoR operons of Escherichia coli, Shigella dysenteriae, and Klebsiella pneumoniae. J. Bacteriol. 171:6593-6599.
10. Makino, K., H. Shinagawa, M. Amemura, T. Kawamoto, M. Yamada, and A. Nakata. 1989. Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins. J. Mol. Biol. 210:551-559.
11. Makino, K., H. Shinagawa, M. Amemura, and A. Nakata. 1986. Nucleotide sequence of the phoB gene, the positive regulatory gene for the phosphate regulon of Escherichia coli K-12. J. Mol. Biol. 190:37-44.
12. Makino, K., H. Shinagawa, and A. Nakata. 1985. Regulation of the phosphate regulon of Escherichia coli K-12: regulation and role of the regulatory gene phoR. J. Mol. Biol. 184:231-240.
13. Makino, S., C. Sasakawa, K. Kamata, T. Kurata, and M. Yoshikawa. 1986. A genetic determinant required for continuous reinfection of adjacent cells on large plasmid in Shigella flexneri 2a. Cell 46:551-555.
14. Mathew, J. A., Y. P. Tan, P. S. Srinivasa Rao, T. M. Lim, and K. Y. Leung. 2001. Edwardsiella tarda mutants defective in siderophore production, motility, serum resistance and catalase activity. Microbiology 147:449-457.
15. Metcalf, W. W., P. M. Steed, and B. L. Wanner. 1990. Identification of phosphate starvation-inducible genes in Escherichia coli K-12 by DNA sequence analysis of psi::lacZ(Mu d1) transcriptional fusions. J. Bacteriol. 172:3191-3200.
16. Oaks, E. V., M. E. Wingfield, and S. B. Formal. 1985. Plaque formation by virulent Shigella flexneri. Infect. Immun. 48:124-129.
17. Orihuela, C. J., J. Mills, C. W. Robb, C. J. Wilson, D. A. Watson, and D. W. Niesel. 2001. Streptococcus pneumoniae PstS production is phosphate responsive and enhanced during growth in the murine peritoneal cavity. Infect. Immun. 69:7565-7571.
18. Overbeeke, N., H. Bergmans, F. van Mansfeld, and B. Lugtenberg. 1983. Complete nucleotide sequence of phoE, the structural gene for the phosphate limitation inducible outer membrane pore protein of Escherichia coli K12. J. Mol. Biol. 163:513-532.
19. Payne, S. M., D. W. Niesel, S. S. Peixotto, and K. M. Lawlor. 1983. Expression of hydroxamate and phenolate siderophores by Shigella flexneri. J. Bacteriol. 155:949-955.
20. Pupo, G. M., R. Lan, and P. R. Reeves. 2000. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc. Natl. Acad. Sci. USA 97:10567-10572.
21. Runyen-Janecky, L. J., M. Hong, and S. M. Payne. 1999. The virulence plasmid-encoded impCAB operon enhances survival and induced mutagenesis in Shigella flexneri after exposure to UV radiation. Infect. Immun. 67:1415-1423.
22. Runyen-Janecky, L. J., and S. M. Payne. 2002. Identification of chromosomal Shigella flexneri genes induced by the eukaryotic intracellular environment. Infect. Immun. 70:4379-4388.
23. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
24. Sansonetti, P. J., C. Egile, and C. Wenneras. 2001. Shigellosis: from disease symptoms to molecular and cellular pathogenesis, p. 335-385. In E. Groisman (ed.), Principles of bacterial pathogenesis. Academic Press, New York, N.Y.
25. Scholten, M., R. Janssen, C. Bogaarts, J. van Strien, and J. Tommassen. 1995. The pho regulon of Shigella flexneri. Mol. Microbiol. 15:247-254.
26. Simon, E. H., and I. Tessman. 1963. Thymidine requiring mutants of phage T4. Proc. Natl. Acad. Sci. USA 50:526-532.
27. Sinai, A. P., and P. M. Bavoil. 1993. Hyper-invasive mutants define a novel Pho-regulated invasion pathway in Escherichia coli. Mol. Microbiol. 10:1125-1137.
28. Srinivasa Rao, P. S., T. M. Lim, and K. Y. Leung. 2003. Functional genomics approach to the identification of virulence genes involved in Edwardsiella tarda pathogenesis. Infect. Immun. 71:1343-1351.
29. Surin, B. P., H. Rosenberg, and G. B. Cox. 1985. Phosphate-specific transport system of Escherichia coli: nucleotide sequence and gene-polypeptide relationships. J. Bacteriol. 161:189-198.
30. Taylor, R. K., C. Manoil, and J. J. Mekalanos. 1989. Broad-host-range vectors for delivery of TnphoA: use in genetic analysis of secreted virulence determinants of Vibrio cholerae. J. Bacteriol. 171:1870-1878.
31. Valdivia, R. H., and S. Falkow. 1997. Fluorescence-based isolation of bacterial genes expressed within host cells. Science 277:2007-2111.
32. Wang, R. F., and S. R. Kushner. 1991. Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene 100:195-199.
33. Wanner, B. L. 1996. Phosphorous assimulation and control of the phosphate regulon, p. 1357-1381. In F. C. Neidhardt and R. Curtiss (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
34. Wanner, B. L., and M. R. Wilmes-Riesenberg. 1992. Involvement of phosphotransacetylase, acetate kinase, and acetyl phosphate synthesis in control of the phosphate regulon in Escherichia coli. J. Bacteriol. 174:2124-2130.
35. Wei, J., M. B. Goldberg, V. Burland, M. M. Venkatesan, W. Deng, G. Fournier, G. F. Mayhew, G. Plunkett III, D. J. Rose, A. Darling, B. Mau, N. T. Perna, S. M. Payne, L. J. Runyen-Janecky, S. Zhou, D. C. Schwartz, and F. R. Blattner. 2003. Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect. Immun. 71:2775-2786.(L. J. Runyen-Janecky, A. )
Section for Molecular Genetics and Microbiology and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas
ABSTRACT
In response to the host cell environment, the intracellular pathogen Shigella flexneri induces the expression of numerous genes, including those in the pst operon which is predicted to encode a high-affinity phosphate acquisition system that is expressed under reduced phosphate conditions. An S. flexneri pst mutant forms smaller plaques in Henle cell monolayers than does the parental strain. This mutant exhibited normal production and localization of the S. flexneri IcsA protein. The pst mutant had the same growth rate as the parental strain in both phosphate-reduced and phosphate-replete media in vitro and during the first 3 h of growth in Henle cells in vivo. During growth in phosphate-replete media, the PhoB regulon was constitutively expressed in the pst mutant but not the parental strain. This suggested that the inability of the S. flexneri pst mutant to form wild-type plaques in Henle cell monolayers may be due to aberrant expression of the PhoB regulon. A mutation in phoB was constructed in the S. flexneri pst mutant, and the phoB mutation suppressed the small plaque phenotype of the pst mutant. Additionally, a specific mutation (R220Q) was constructed in the pstA gene of the pst operon that was predicted to eliminate Pst-mediated phosphate transport but allow normal PhoB-regulated gene expression, based on the phenotype of an Escherichia coli strain harboring the same mutation. Addition of this pstAR220Q mutation to a S. flexneri pst mutant, as part of the pst operon, restored normal plaque formation and regulation of phoA expression.
INTRODUCTION
Shigella flexneri is a facultative intracellular bacterium that causes bacterial dysentery in humans. While in the host, Shigella can invade colonic epithelial cells and survive and multiply within the eukaryotic cytosol (24). This environment is a unique niche for Shigella, consisting of a particular set of nutrients and ions, distinct from the extracellular and external environments. Specific S. flexneri genes are induced in response to exposure to the eukaryotic cytosol and encode, among other things, proteins involved in metabolism and nutrient uptake (22). Two of these intracellular induced S. flexneri genes are the phoA and pstS genes, which encode proteins that mediate inorganic phosphate acquisition. phoA encodes an alkaline phosphatase that cleaves phosphate from organophosphates in the periplasm (7), and pstS encodes a periplasmic phosphate binding protein (29). This suggested that genes that mediate inorganic phosphate acquisition might be important for Shigella to survive in the intracellular environment and that phosphate levels may be a signal for intracellular induction of Shigella genes.
In Escherichia coli, which is very closely related to S. flexneri phylogenetically (20), the Pst high-affinity inorganic phosphate uptake system has been well characterized. The Pst system is a member of the periplasmic binding protein-dependent ABC transporter family, which transports molecules from the periplasm to the cytoplasm. The proteins in the Pst system are encoded within the five-gene pst operon. The system is composed of the periplasmic phosphate binding protein PstS; the two transmembrane proteins PstA and PstC, which transport the phosphate through the inner membrane; the ATP binding protein PstB, which supplies the energy for transport via ATP hydrolysis; and a protein (PhoU) whose role in phosphate transport is not clear (29).
In addition to mediating high-affinity phosphate uptake, the Pst system also influences phosphate-mediated gene regulation. Inorganic phosphate regulation of gene expression in E. coli and S. flexneri is mediated by the two-component regulatory system PhoR/PhoB (25, 33). This regulatory system consists of the phosphate sensor PhoR and the transcriptional activator PhoB, which binds to PhoB boxes in the promoters of genes that it regulates. PhoR, whose amino terminus is associated with the bacterial membrane, senses phosphate levels outside the cell (10). Under reduced phosphate conditions, PhoR phosphorylates the transcriptional activator PhoB, which enhances the DNA binding activity of this protein (10). Active PhoB directly binds the promoter region of PhoB-regulated genes to activate gene expression in most cases (11). Among the 31 PhoB-regulated genes is the gene encoding alkaline phosphate (phoA). When phosphate levels are high outside the cell, the Pst complex maintains PhoR in a conformation that dephosphorylates (and therefore inactivates) PhoB. In E. coli, mutations that disrupt the Pst system generally result in constitutive expression of the PhoB regulon (33).
In S. flexneri, a polar mutation in the pstS gene eliminates expression of the entire pst operon and thus of the Pst system, and an S. flexneri strain carrying this pst mutation forms smaller plaques on Henle cells than those formed by wild-type S. flexneri (22). The underlying reason for the small plaque phenotype of the S. flexneri pst mutant is currently unknown; however, since other phosphate transport systems may compensate for lack of Pst-mediated phosphate transport, the defect in the pst mutant could be due to constitutive expression of the PhoB regulon. The aim of this study was to elucidate the molecular basis of the plaque formation defect of an S. flexneri pst mutant strain.
MATERIALS AND METHODS
Bacterial strains and plasmids. The bacterial strains and plasmids used in this study are listed in Table 1. E. coli strains were routinely grown in Luria-Bertani (LB) broth or on LB agar. S. flexneri strains were typically grown in LB broth at 30°C or at 37°C when expression of invasion proteins was required. For growth on solid media, S. flexneri strains were grown on tryptic soy broth agar plus 0.01% Congo red dye at 37°C. Antibiotics, when required, were generally used at the following concentrations (per milliliter): 12.5 μg of tetracycline, 15 μg of chloramphenicol, 200 μg of streptomycin, and 125 μg of carbenicillin. X-gal was added at 40 μg/ml for blue-white selection in cloning.
To grow strains in various concentrations of phosphate, T medium (26) containing 0.4% glucose, 2 μg of nicotinic acid/ml, and 40 μM ferrous sulfate was made without phosphate, and various amounts of potassium phosphate (pH 7.0) were then added to the media. Complete T media containing 2 or 0.01 mM phosphate was designated high-phosphate media (HPM) and low-phosphate media (LPM), respectively.
Standard recombinant DNA procedures. Small plasmids were routinely isolated using a QIAprep Spin Miniprep kit (QIAGEN, Santa Clarita, Calif.). Chromosomal DNA was isolated using a DNeasy tissue kit (QIAGEN). DNA was extracted from agarose gels and/or purified using either a QIAquick gel extraction kit or a QIAGEN QuiaxII bead kit (QIAGEN). Chromosomal DNA was extracted using a QIAGEN DNeasy tissue kit. All procedures were performed according to the manufacturer's instructions. Restriction enzyme digests were performed using buffers and enzymes from Promega Corp. (Madison, Wis.). Ligations were performed using T4 DNA ligase (Promega) and the buffer supplied by the manufacturer and were incubated at either 16°C for 4 h to overnight for sticky-end ligations or at room temperature (25°C) overnight for blunt-end ligations.
All PCRs were carried out using either Taq (Promega) or Pfu Turbo polymerase (Stratagene Cloning Systems, La Jolla, Calif.) by using the buffers and instructions supplied by the manufacturer. Taq was used for all PCRs unless the fragments were to be cloned or sequenced, in which case Pfu Turbo was used. Primers for individual PCRs are listed in the appropriate sections below. The reactions conditions were as follows: (i) 5 min at 95°C; (ii) 30 s at 95°C; (iii) 30 s at 55°C; (iv) 2 min/kb of desired product at 72°; (v) repeat steps two to four 29 times; (vi) 10 min at 72°C; (vii) 4°C.
IcsA localization. Rabbit polyclonal antibody against IcsA (Rabbit 35) was obtained from Edwin Oaks (Walter Reed Army Institute of Research). Bacterial strains were grown to late logarithmic phase, centrifuged, washed two times with Dulbecco’s phosphate-buffered saline (PBS-D), and fixed in PBS-D containing 4% paraformaldehyde for 15 min. Then, the bacteria were washed twice with PBS-D, resuspended in 100 μl of IcsA antiserum diluted 1:100 in PBS-D, and incubated for 1 h. After three washes in PBS-D, the bacteria were resuspended in 100 μl of fluorescein isothiocyanate-conjugated goat anti-rabbit secondary antibody (ICN Biomedicals) diluted 1:100 in PBS-D and incubated for 1 h shielded from light. The bacteria were washed twice with PBS and resuspended in a final volume of 100 μl of PBS. One to 10 microliters of the samples was air dried on a slide. Coverslips were mounted on the slide in mounting media containing PBS-D, pH 8, 0.1% phenylenediamine, and 90% glycerol and visualized by fluorescent microscopy.
phoA expression. phoA expression was measured using the plasmid-borne phoA-gfp fusion pLR83 (22) or by reverse transcription (RT)-PCR. For phoA-gfp expression studies, Shigella strains containing pLR83 were subcultured 1:100 into HPM or LPM and grown for 5 to 6 h at 37°C. One milliliter of each culture was centrifuged and the pellet was resuspended in 4% paraformaldehyde for 10 min. The samples were then washed twice by centrifugation followed by resuspension of the cell pellet in low-salt PBS. Green fluorescent protein (GFP) levels were quantified using a FACSCaliber (Becton Dickinson, Franklin Lakes, N.J.) fluorescence-activated cell sorter with an excitation at 488 nm. FACSCaliber settings were as follows: forward scatter, E01; side scatter, 505; and relative fluorescence between 515 and 545 nm, 798.
For phoA expression studies using RT-PCR, overnight LB cultures were pelleted and concentrated 10-fold in LPM media. The resuspended cells were inoculated 1:100 into either LPM or HPM and incubated at 37°C for 5 h. Total RNA was isolated from the cultures by using a RNeasy Mini kit (QIAGEN) and quantitated by measuring the absorbance at 260 nm. To amplify and quantitate the amount of phoA mRNA in each sample, RT-PCR was carried out using a One-Step RT-PCR kit (QIAGEN) according to the manufacturer's instructions. Aliquots of the reactions were removed at cycles 21, 24, 27, and 30 to verify linearity. RT-PCR was performed with 10 ng of total RNA by using the phoA primers UR033 (5' TATTGCACTGGCACTCTTACC 3') and UR037 (5' AGCGCATAGTGAGTGTATTGC 3'). The RT-PCR products were run on a 1.5% agarose gel, and the amount of DNA in each 0.3-kb phoA band was quantified using densitometry analysis.
Construction of UR005 (S. flexneri pstS phoB double mutant) by allelic exchange. The phoBR genes from strain SM100 were amplified by using PCR with primers phoBR1 (5 'CGGGATCCAAACTCAGTGGAATGGG 3') and phoBR2 (5' CGGAATTCGCATCGGCTGGCTTATGG 3'). The phoBR fragment was digested with EcoRI and BamHI and ligated with pWKS30 digested with EcoRI and BamHI to generate pLL1. A 1.5-kb fragment containing a tetracycline resistance gene (tet) was isolated from pMTLtet by digestion with PstI and mung bean nuclease and was inserted into the SmaI site in phoB on pLL1. phoBR with the tet resistance cassette in phoB was excised as a XhoI/XbaI fragment and ligated into pHM5 digested with SalI/XbaI to generate pLL2.
pLL2 containing the phoB::tet gene was mated from E. coli SM10pir to S. flexneri SM169, and cells were plated on tryptic soy broth agar containing tetracycline and chloramphenicol. Isolated colonies were then streaked on LB agar plates containing 5% sucrose, tetracycline, and chloramphenicol to select for double-crossover recombinant colonies. Putative mutants were screened for carbenicillin sensitivity on LB agar. Disruption of the chromosomal phoB gene was confirmed by PCR analysis.
Generation of the pstA point mutation pstAR220Q by overlap extension. To generate the mutation in S. flexneri pstA which changes arginine 220 to glutamine (pstAR220Q), PCR overlap extension (5) was employed using the overlapping primers UR015 (5' GCGATTGCCCAAATTGCC 3') and UR016 (5' GGCAATTTGGGCAATCGC 3') containing the underlined mutations. The two overlapping fragments were generated separately using PCR with the primer pairs UR016-UR013 (5' GTATCGTTCTTCCGTTCACCA 3') and UR015-UR014 (5' ATACGTACCGCTTCGTCAATG 3'). The PCR products were gel purified, and these fragments were used as the template DNA in a second PCR with primers UR013 and UR014 to generate a full-length DNA fragment containing the pstAR220Q mutation.
To replace wild-type pstA in pPst1 with the mutated pstAR220Q, the 2.1-kb StyI fragment from the pstAR220Q PCR fragment was used to replace the corresponding StyI fragment in pPst1. Sequence analysis at the Nucleic Acid Research Facility at Virginia Commonwealth University confirmed that the pstAR220Q point mutation was the only mutation present on the resulting plasmid pAB1.
Henle cell assays. Monolayers of Henle cells (intestinal 407 cells; American Type Culture Collection, Manassas, Va.) were used in all experiments and were maintained at 37°C in a 5% CO2 atmosphere in Henle medium, which consists of minimum essential medium (Invitrogen Corp., Carlsbad, Calif.), 2 mM glutamine, nonessential amino acids, and 10% fetal bovine serum (Invitrogen). The intracellular multiplication assay was performed as described previously (6). Briefly, to infect the Henle cells with Shigella, subconfluent monolayers were infected with Shigella at a multiplicity of infection of 100 and incubated for 45 min. The infected monolayers were washed and incubated in Henle medium containing gentamicin (20 μg/ml). At the indicated time points, bacteria were recovered from one set of infected Henle cells by lysis of the Henle cells with 1 to 5% deoxycholate and plated on Congo red agar. A second set of infected monolayers was stained with Wright-Giemsa stain to quantitate percent invasion (percentage of Henle cells containing three or more intracellular bacteria). The average number of intracellular bacteria per infected Henle cell was calculated as CFU from the Congo red agar divided by the number of infected Henle cells.
Plaque assays were performed as described by Oaks et al. (16) with the modifications described in Hong et al. (6), and plaques were scored after 2 to 4 days.
RESULTS
Virulence-associated phenotypes of the S. flexneri pst mutant SM169. We previously constructed an insertion mutation in the S. flexneri pstS gene that was polar on all of the downstream genes in the pst operon. This pst mutant, SM169, forms smaller plaques in eukaryotic cell (Henle) monolayers than does the parental strain (22). Since wild-type plaque formation requires polar localization of the Shigella protein IcsA (13), the small plaque defect in SM169 may be due to aberrant IcsA localization. Thus, we examined IcsA localization in SM169 by indirect immunofluorescence. The pst mutant SM169 exhibited production and localization of the S. flexneri IcsA protein that was similar to that of the wild-type strain SM100 (Fig. 1). This suggested that the small plaque formation is due to an underlying defect other than improper IcsA localization.
Growth of the S. flexneri pst mutant SM169 in vitro and in vivo. Wild-type plaque formation also requires normal growth of Shigella within the Henle cell cytosol (16). To determine whether the pst mutation affected the growth rate of Shigella, we compared the growth of the pst mutant SM169 to the growth of the wild-type strain SM100 in vitro and inside Henle cells. In T medium containing various concentrations of phosphate (ranging from 2 to 0.001 mM), there was no difference between the optical density of SM100 and that of SM169 at each phosphate concentration (Fig. 2). This suggests that the pst mutation does not significantly affect the growth of Shigella in vitro.
The intracellular multiplication assay was used to measure growth of Shigella in Henle cells. Bacteria were recovered from infected Henle cell monolayers at various time intervals postinvasion, and the number of bacteria per infected Henle cell was determined (Fig. 3). The number of SM169 bacteria recovered at each time point was similar to the number of SM100 that were recovered at the same time, suggesting that the underlying cause of the small plaque phenotype in the pst mutant is not a reduced growth rate during the first 3 h of Henle cell infection. Intracellular growth of the strains at later time points could not be easily measured using the intracellular multiplication assay because the Henle cells lyse approximately 4 h postinvasion (data not shown). The size of the plaques that Shigella forms 2 to 3 days postinfection on Henle cell monolayers is proportional to the intracellular growth rate (6). Extra phosphate (7 mM) was added to the plaque assays in an attempt to suppress the small plaque defect of SM169. However, cells supplemented with additional phosphate had the same size plaques as those that were not supplemented (data not shown).
Expression of the PhoB regulon in the S. flexneri pst mutant SM169. In E. coli, the Pst system interacts with the PhoBR regulatory system to control phosphate-mediated gene regulation (33). E. coli pst mutants constitutively express genes in the PhoB regulon, which are normally repressed in phosphate-replete media. To determine whether this is the case in S. flexneri, we used a plasmid-borne fusion of the PhoB-regulated gene phoA to the promoterless gfp gene (pLR83) to assess expression of the PhoB regulon. Wild-type S. flexneri SM100 and the pst mutant SM169 carrying pLR83 were grown in HPM or LPM, and GFP reporter activity was measured. In SM100/pLR83, GFP expression driven by the phoA promoter was 22-fold lower after growth in HPM, relative to GFP expression after growth in LPM (Fig. 4). In contrast, GFP expression driven by the phoA promoter in SM169/pLR83 was aberrantly high when the strain was grown in HPM; specifically, GFP expression was only twofold lower after growth in HPM, relative to GFP expression after growth in LPM, and there was 23-fold more phoA promoter activity in SM169, relative to SM100, in HPM (Fig. 4). Thus, the pst mutation resulted in increased, and essentially constitutive, expression of phoA (Fig. 4) and other genes in the PhoB regulon (data not shown). This suggests that, as in E. coli, when phosphate levels are high outside the cell, the Shigella Pst complex maintains PhoR in a conformation that dephosphorylates (and therefore inactivates) PhoB.
Suppression of the plaque defect in SM169 by a phoB mutation. PhoB mediates induction of phoA and other genes in the PhoB regulon under low phosphate conditions (10-12). If constitutive expression of the PhoB regulon in the pst mutant SM169 is responsible for the small plaque phenotype, then elimination of PhoB in this strain would be expected to restore normal plaque formation ability to SM169. A phoB mutation was generated by allelic exchange in the S. flexneri pst mutant strain to test this hypothesis. The resulting pst phoB mutant (UR005) formed plaques on Henle cells monolayers that were similar in size to those formed by wild-type SM100, and two times larger in area than the plaques formed by SM169, indicating that eliminating normal PhoB restored the normal plaque formation capability to the pst mutant (Fig. 5A to C). This suggests that constitutive expression of a gene (or genes) in the PhoB regulon was responsible for the small plaque phenotype in SM169.
Plaque-forming ability of a pstA mutant with uncoupled Pst-mediated phosphate transport and regulation. To provide further evidence that the small plaque defect in the pst mutant results from constitutive expression of the PhoB regulon, we introduced a defined mutation (pstAR220Q) into the S. flexneri pstA gene. PstAR220Q had been shown previously to allow wild-type expression of genes in the PhoB regulon but prevent Pst-mediated phosphate transport in E. coli (2). A DNA fragment containing this mutation was used to replace the corresponding wild-type pstA sequence on pPst1, which carries the entire S. flexneri pst operon.
We confirmed that pstAR220Q conferred wild-type expression of the PhoB regulon in the S. flexneri pst mutant by examining expression of the PhoB-regulated gene phoA by RT-PCR. phoA DNA was amplified by RT-PCR on RNA isolated from various S. flexneri strains grown in LPM or HPM. The pst mutant strain containing only the vector (SM169/pWKS30) showed consistently high expression of phoA regardless of the phosphate levels. The pst operon containing the pstAR220Q mutation on pAB1 complemented the constitutive PhoB regulon defect in the pst mutant SM169 just as effectively as the wild-type pst operon on pPst1: SM169 carrying either pAB1 or pPst1 had a wild-type pattern of phoA expression (i.e., low levels of phoA expression in HPM and high levels of phoA expression in LPM) (Fig. 6).
The ability of pAB1 to restore normal plaque formation to SM169 was also assessed. SM169 and SM169/pWKS30 formed plaques that were two times smaller in area than the wild-type plaques, while the pstAR220Q mutant (SM169/pAB1) formed plaques similar in size to those formed by SM100 and SM169/pPst1 (Fig. 5). Since the pstAR220Q mutation confers wild-type expression of genes in the PhoB regulon (Fig. 6) and normal plaque formation (Fig. 5), but defective Pst-mediated phosphate transport (2), this suggests that constitutive expression of a gene or genes in the PhoB regulon was responsible for the small plaque phenotype in SM169.
DISCUSSION
The ability of Shigella to cause disease is frequently correlated with the ability to form plaques on eukaryotic cell monolayers. Plaque formation is a complex phenotype that is the result of a sequence of events including invasion and entry into the cytoplasm of eukaryotic cells, multiplication within the host cells, polar localization of the bacterial protein IcsA and subsequent polymerization of host cell actin, and lysis of the vacuoles that surround the double membrane after intercellular spread. Many Shigella mutants have been isolated that form small plaques and the underlying defect can be in one or more of the above processes. The S. flexneri pst mutant SM169 forms smaller plaques relative to the parental strain SM100 (22). SM169 invades at the same frequency and localizes IcsA in a similar fashion as SM100, suggesting that the small plaque phenotype is not due to defects in these processes. During the first 3 h after infection of Henle cells, SM169 and SM100 multiply at the same rate within the eukaryotic cytosol; however, we cannot eliminate the possibility that growth of the pst mutant SM169 slows down at a later time, relative to SM100, possibly due to nonoptimal expression of the PhoB regulon (see below).
E. coli pst mutants are defective in both high-affinity phosphate transport and in phosphate-dependent regulation of the PhoB regulon (29, 33). It was not apparent which of these Pst-mediated functions was required for normal plaque formation in Shigella since defects in either or both of these tasks could contribute to the small plaque phenotype. Because other phosphate transport systems such as the PitA and PitB systems exist in S. flexneri (35), it was possible that these systems compensate for loss of Pst-mediated phosphate transport in S. flexneri pst mutants but not necessarily for aberrant regulation of the PhoB regulon. Thus, the failure to form wild-type plaques was hypothesized to be the result of aberrant PhoB-mediated regulation. Two lines of evidence from this study support this model. First, the small plaque defect in the pstS mutant was suppressed by mutating the gene encoding the activator of the PhoB regulon (phoB) to eliminate PhoB regulon overexpression in the pst mutant. This data also suggests that PhoB may not be required for virulence, which is consistent with the observation that some Shigella dysenteriae strains have mutations in phoB (9). Second, a Pst system with PstAR220Q, which confers normal expression of the PhoB regulon but defective Pst-mediated phosphate transport, restored the ability of the Shigella pst mutant to form wild-type plaques on Henle cell monolayers. Taken together, these results indicate that the regulatory function of Pst is more important than it's phosphate transport function for S. flexneri's growth and intercellular spread in Henle cells, and the results are consistent with the model of aberrant PhoB regulon expression being responsible for SM169's plaque formation defect.
Optimal growth of a bacterium in its niche requires finely tuned gene expression. Shigella has numerous genes that are predicted to be regulators of gene expression (35). If the Shigella pst mutant expresses any of the 31 PhoB-regulated genes (33) at aberrantly high levels (due to the defective Pst system) while in the eukaryotic cell, this uncontrolled expression may be detrimental. Two PhoB regulon genes encode known or predicted periplasmic proteins: PsiF and PhoA, a nonspecific alkaline phosphatase (7, 15). Two genes in the PhoB regulon, psiE and phoE, encode an inner membrane protein and an outer membrane porin, respectively (1, 15, 18). Uncontrolled expression of either of these membrane proteins may disrupt the bacterial membrane or allow too much of a transported ligand to enter Shigella. Two PhoB-regulated operons are involved in phosphonate uptake and degradation (33). Phosphonates are a class of organophosphorus compounds that have carbon-phosphorous bonds. The enzymes encoded by these systems may be harmful to intracellular Shigella if expressed at abnormally high levels. Further, overexpression of the membrane components of the ABC transporter systems, which transport the substrates for these systems into the bacterial cell, may be toxic to the cell or slow down the growth rate when Shigella is intracellular. Finally, the PhoB-regulated protein PhoH contains two motifs that resemble a nucleotide binding pocket and, not surprisingly, PhoH binds ATP (8). PhoH may hydrolyze ATP, since this is a common feature of many ATP binding proteins. Excessive ATP hydrolysis when Shigella is intracellular may be detrimental. Interestingly, the genome sequence of S. flexneri strain 2457 has two frameshifts in the phoH gene, but the phoH sequence in S. flexneri strain 301 does not have these frameshifts. It is not known whether PhoH is expressed in SM100, the strain used in this study.
Recent studies suggest that the Pst system may modulate the virulence of several other pathogens. Mutations in pst cause reduced virulence in the fish pathogen Edwardsiella tarda (14, 28) and eliminate virulence in an E. coli strain pathogenic to pigs (3). In an enteroinvasive E. coli strain, an insertion mutation in the pst operon resulted in a hyperinvasive phenotype; however, this is not the case for S. flexneri (27). In enteroinvasive E. coli, overexpression of the Pst operon may induce an unknown invasion pathway. Expression of the Streptococcus pneumoniae pstS gene increases during growth in the murine peritoneal cavity, but it is not known whether the encoded protein contributes to virulence (17). Valdivia and Falkow (31) showed that the pstS gene was induced when Salmonella enterica serovar Typhimurium was intracellular; however, the pstS mutant was not attenuated in virulence. This may reflect a difference in the intracellular location of Salmonella compared to Shigella. Salmonella resides in an altered macrophage vacuole, while Shigella is found in the cytosol of colonic epithelial cells.
Although the S. flexneri pstS and phoA genes are induced in the eukaryotic cytosol, which suggested that the bacteria may be sensing reduced levels of available phosphate (22), the underlying reason for the small plaque phenotype in the pst mutant appears to be aberrant overexpression of the PhoB operon, not phosphate limitation. Previously observed induction of genes in the PhoB regulon when Shigella was intracellular was complicated, as only part of the bacterial population that was grown in Henle cells induced the pstS and phoA genes during the initial stages of infection. This suggested that either individual Henle cells may have different phosphate levels or different parts of the Henle cell may have different phosphate levels (22). In light of our new data that supports aberrant overexpression of the PhoB regulon, not phosphate limitation, as the underlying reason for the small plaques in the pst mutant, it is possible that the bacteria are not severely starved for phosphate in the eukaryotic cytosol. Instead, the intracellular bacteria may be experiencing moderate phosphate limitation which would cause the intermediate induction of the PhoB regulon that appears to be optimal for Shigella in the Henle cell cytosol but would not cause complete induction (as in the pst mutant) of the PhoB regulon that appears to be detrimental to plaque formation when Shigella is intracellular. Finally, intracellular induction of the PhoB regulon may be due not to phosphate limitation but to cross talk with the CreBC two-component regulatory system. In E. coli there is a phosphate-independent induction of the PhoB regulon that requires the sensor protein CreC, which may be detecting a central metabolism intermediate, and glucose, acetate, or pyruvate C (34). A similar system may exist in Shigella.
ACKNOWLEDGMENTS
We gratefully thank the following individuals for their generous help: Haig Eskandarian for critical reading of the manuscript, Georgiana Purdy for help with IcsA localization assays, Edwin Oaks for anti-IcsA antisera, Stefan Seliger for strain SM100, and Stephanie Reeves for pMTLtet.
This work was supported by Public Health Service Grants AI09918 awarded to L. J. Runyen-Janecky and AI16935 awarded to S. M. Payne and by funding from the University of Richmond School of Arts and Sciences. A. M. Boyle was supported by the Robert F. Smart Award in Biology at the University of Richmond.
REFERENCES
1. Benz, R., R. P. Darveau, and R. E. Hancock. 1984. Outer-membrane protein PhoE from Escherichia coli forms anion-selective pores in lipid-bilayer membranes. Eur. J. Biochem. 140:319-324.
2. Cox, G. B., D. Webb, J. Godovac-Zimmermann, and H. Rosenberg. 1987. Arg-220 of the PstA protein is required for phosphate transport through the phosphate-specific transport system in Escherichia coli but not for alkaline phosphatase repression. J. Bacteriol. 170:2283-2286.
3. Daigle, F., J. Fairbrother, and J. Harel. 1995. Identification of a mutation in the pst-phoU operon that reduces pathogenicity of an Escherichia coli strain causing septicemia in pigs. Infect. Immun. 63:4924-4927.
4. Ditta, G., S. Stanfield, D. Corbin, and D. R. Helinski. 1980. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc. Natl. Acad. Sci. USA 77:7347-7351.
5. Ho, S. N., H. D. Hunt, R. M. Horton, J. K. Pullen, and L. R. Pease. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
6. Hong, M., Y. Gleason, E. E. Wyckoff, and S. M. Payne. 1998. Identification of two Shigella flexneri chromosomal loci involved in intercellular spreading. Infect. Immun. 66:4700-4710.
7. Inouye, H., S. Michaelis, A. Wright, and J. Beckwith. 1981. Cloning and restriction mapping of the alkaline phosphatase structural gene (phoA) of Escherichia coli and generation of deletion mutants in vitro. J. Bacteriol. 146:668-675.
8. Kim, S. K., K. Makino, M. Amemura, H. Shinagawa, and A. Nakata. 1993. Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J. Bacteriol. 175:1316-1324.
9. Lee, T., K. Makino, H. Shinagawa, M. Amemura, and A. Nakata. 1989. Phosphate regulon in members of the family Enterobacteriaceae: comparison of the phoB-phoR operons of Escherichia coli, Shigella dysenteriae, and Klebsiella pneumoniae. J. Bacteriol. 171:6593-6599.
10. Makino, K., H. Shinagawa, M. Amemura, T. Kawamoto, M. Yamada, and A. Nakata. 1989. Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins. J. Mol. Biol. 210:551-559.
11. Makino, K., H. Shinagawa, M. Amemura, and A. Nakata. 1986. Nucleotide sequence of the phoB gene, the positive regulatory gene for the phosphate regulon of Escherichia coli K-12. J. Mol. Biol. 190:37-44.
12. Makino, K., H. Shinagawa, and A. Nakata. 1985. Regulation of the phosphate regulon of Escherichia coli K-12: regulation and role of the regulatory gene phoR. J. Mol. Biol. 184:231-240.
13. Makino, S., C. Sasakawa, K. Kamata, T. Kurata, and M. Yoshikawa. 1986. A genetic determinant required for continuous reinfection of adjacent cells on large plasmid in Shigella flexneri 2a. Cell 46:551-555.
14. Mathew, J. A., Y. P. Tan, P. S. Srinivasa Rao, T. M. Lim, and K. Y. Leung. 2001. Edwardsiella tarda mutants defective in siderophore production, motility, serum resistance and catalase activity. Microbiology 147:449-457.
15. Metcalf, W. W., P. M. Steed, and B. L. Wanner. 1990. Identification of phosphate starvation-inducible genes in Escherichia coli K-12 by DNA sequence analysis of psi::lacZ(Mu d1) transcriptional fusions. J. Bacteriol. 172:3191-3200.
16. Oaks, E. V., M. E. Wingfield, and S. B. Formal. 1985. Plaque formation by virulent Shigella flexneri. Infect. Immun. 48:124-129.
17. Orihuela, C. J., J. Mills, C. W. Robb, C. J. Wilson, D. A. Watson, and D. W. Niesel. 2001. Streptococcus pneumoniae PstS production is phosphate responsive and enhanced during growth in the murine peritoneal cavity. Infect. Immun. 69:7565-7571.
18. Overbeeke, N., H. Bergmans, F. van Mansfeld, and B. Lugtenberg. 1983. Complete nucleotide sequence of phoE, the structural gene for the phosphate limitation inducible outer membrane pore protein of Escherichia coli K12. J. Mol. Biol. 163:513-532.
19. Payne, S. M., D. W. Niesel, S. S. Peixotto, and K. M. Lawlor. 1983. Expression of hydroxamate and phenolate siderophores by Shigella flexneri. J. Bacteriol. 155:949-955.
20. Pupo, G. M., R. Lan, and P. R. Reeves. 2000. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc. Natl. Acad. Sci. USA 97:10567-10572.
21. Runyen-Janecky, L. J., M. Hong, and S. M. Payne. 1999. The virulence plasmid-encoded impCAB operon enhances survival and induced mutagenesis in Shigella flexneri after exposure to UV radiation. Infect. Immun. 67:1415-1423.
22. Runyen-Janecky, L. J., and S. M. Payne. 2002. Identification of chromosomal Shigella flexneri genes induced by the eukaryotic intracellular environment. Infect. Immun. 70:4379-4388.
23. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
24. Sansonetti, P. J., C. Egile, and C. Wenneras. 2001. Shigellosis: from disease symptoms to molecular and cellular pathogenesis, p. 335-385. In E. Groisman (ed.), Principles of bacterial pathogenesis. Academic Press, New York, N.Y.
25. Scholten, M., R. Janssen, C. Bogaarts, J. van Strien, and J. Tommassen. 1995. The pho regulon of Shigella flexneri. Mol. Microbiol. 15:247-254.
26. Simon, E. H., and I. Tessman. 1963. Thymidine requiring mutants of phage T4. Proc. Natl. Acad. Sci. USA 50:526-532.
27. Sinai, A. P., and P. M. Bavoil. 1993. Hyper-invasive mutants define a novel Pho-regulated invasion pathway in Escherichia coli. Mol. Microbiol. 10:1125-1137.
28. Srinivasa Rao, P. S., T. M. Lim, and K. Y. Leung. 2003. Functional genomics approach to the identification of virulence genes involved in Edwardsiella tarda pathogenesis. Infect. Immun. 71:1343-1351.
29. Surin, B. P., H. Rosenberg, and G. B. Cox. 1985. Phosphate-specific transport system of Escherichia coli: nucleotide sequence and gene-polypeptide relationships. J. Bacteriol. 161:189-198.
30. Taylor, R. K., C. Manoil, and J. J. Mekalanos. 1989. Broad-host-range vectors for delivery of TnphoA: use in genetic analysis of secreted virulence determinants of Vibrio cholerae. J. Bacteriol. 171:1870-1878.
31. Valdivia, R. H., and S. Falkow. 1997. Fluorescence-based isolation of bacterial genes expressed within host cells. Science 277:2007-2111.
32. Wang, R. F., and S. R. Kushner. 1991. Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene 100:195-199.
33. Wanner, B. L. 1996. Phosphorous assimulation and control of the phosphate regulon, p. 1357-1381. In F. C. Neidhardt and R. Curtiss (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
34. Wanner, B. L., and M. R. Wilmes-Riesenberg. 1992. Involvement of phosphotransacetylase, acetate kinase, and acetyl phosphate synthesis in control of the phosphate regulon in Escherichia coli. J. Bacteriol. 174:2124-2130.
35. Wei, J., M. B. Goldberg, V. Burland, M. M. Venkatesan, W. Deng, G. Fournier, G. F. Mayhew, G. Plunkett III, D. J. Rose, A. Darling, B. Mau, N. T. Perna, S. M. Payne, L. J. Runyen-Janecky, S. Zhou, D. C. Schwartz, and F. R. Blattner. 2003. Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect. Immun. 71:2775-2786.(L. J. Runyen-Janecky, A. )